That is athena s gift to them beyond all others a genius for lovely work, and a fine mind too. Iucr path degeneracy and exafs analysis of disordered materials. Theoretical exafs data has been generated using standard exafs equation employing the software mathcad. Here the two maiden goddesses, artemis and athena, are playmates of persephone in the flowery meadows of nysa before she is carried off by hades. Synopsis artemis is a graphical and interactive program written in the perl programming language, using the tk display engine, the ifeffit exafs library, and the pgplot plotting library. Artemis is the goddess of the hunt, which is an apt metaphor for the chore of data analysis. If we have left your analysis package off the list, please send mail to prof. Gui, built on ifeffit, for the background removal of xafs data artemis. There may still be a few minor features of ifeffit that are not yet available, and some functionality to port from athena ravel and newville 2005 back to the core library. Gui, built on ifeffit, for xafs analysis and feff calculations data fitting. Software ms windows platform for extraction of quick exafs data bnl x18b ready to use in conventional exafs athenaartemis analysis. For your references, we will be using the software athenaartemis for data analysis.
A practical workshop on exafs shell fitting for environmental samples. Larch was originally conceived to be version 2 of ifeffit newville 2001b, replacing and expanding all the xafs analysis capabilities of that package. In november 2011, i presented an xas training course at the diamond light source. Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of. Womens fly shop athena and artemis womens fly shop. Software ms windows platform for extraction of quick exafs data bnl x18b ready to use in conventional exafs athena artemis analysis. We would like you to download the software and make sure it can open properly on your laptops. Xafs analysis can generally be broken into a few separate steps. The phase shift for the backscattered photoelectron wave has been obtained from the experimental data itself. Artemis is a customizable cloudbased information management system that is used to capture and manage information so our clients can achieve regulatory compliance, meet their business metrics, and drive the efficiencies that matter most to their bottom line. Exafs, xanes data fitting using athena by bruce ravel. This is the first in a series of screencast videos exploring the use of the new version of artemis, a program for exafs data analysis using feff and ifeffit. Exafs analysis software bruce ravels xafs analysis software, athena, artemis, and hephaestus. Jun 20, 2007 athena and artemis were the two virgin daughters of zeus in the greek pantheon.
Basics of data processing brookhaven national laboratory. In addition, there are some minor differences in implementation details, so that slightly different numerical results may be obtained. Exafs analysis software bruce ravels xafs analysis software, athena, artemis, and hephaestus atoms atoms is a program providing crystallographic functionality for the xray absorption spectroscopist. Some familiarity with ifeffit or artemis will help. Also the english article goddesses artemis and athene athena and the finnish short story valtiatar artemis are included in athenaartemis. Rehr the european synchrotron radiation facility keeps an archive of freely available xafs analysis software along with other information about xafs theory and analysis code including feff and all the packages mentioned above. Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its sixframe translation. Exafs 2018 ssrl stanford synchrotron stanford university.
A practical workshop on exafs shell fitting for environmental. Raw data were processed using the athena program and are shown in fig. But i see your point and will include that in the next release. All my lectures and software demonstrations were recorded along with the. Penelope by athena software is a case management software built to help human service organizations achieve their. These programs enable highquality data analysis that is accessible to novices. Pdf data analysis for xray absorption spectroscopy using ifeffit. Concerning athena i see how to work around the problems. A range of xray absorption spectroscopy techniques are available at diamond, including xray absorption nearedge structure xanes, extended xray absorption fine structure exafs, resonant inelastic xray scattering rixs and xray emission spectroscopy xes. Feb 17, 2019 in november 2011 bruce ravel gave a course on the demeter commonly known as athena package at diamond. The name also suggests a fallacious pun which works in english and in the romance languages and which suggests that exafs data analysis is more an art than a science. Penelope by athena software is a case management software built to help human service organizations achieve their missions and improve client outcomes.
Videos of his lectures were recorded and are availab. Kirja kerrallaan 2005 and 2006 is compilation of a novel and other texts in seppo sakari telenius novel manuscript 1992, published as auringolla ratsastajat riders on the sun goddess artemis ltd. Ifeffit bugs in new versions of athena and artemis bruce ravel ravel at phys. Exafs, xanes data fitting using athena by bruce ravel youtube.
The two main components are athena, a program for xas data processing, and artemis, a program for exafs data analysis using theoretical standards from. Rehr the european synchrotron radiation facility keeps an archive of freely available xafs analysis software along with other information about xafs theory and analysis code. The workshop will focus on using gnxas package for exafs data analysis. This video contains material for data processing prior to exafs fitting. Inconsistencies between larch and athenaartemis issue. Introduction to abinitio methods for exafs data analysis. Ifeffit bugs in new versions of athena and artemis. I assumed that there would be minor differences between fitting with these two programs but i believe what i am seeing is too substantial. Application to physics, earth science, chemistry and biology see presentations of profs.
What was the relationship between artemis and athena. Artemiss sister program athena is the data processing program. Aug 16, 2018 for your references, we will be using the software athena artemis for data analysis. This package is based on the ifeffit library of numerical and xas algorithms and is written in the. A software package for the analysis of xray absorption spectroscopy xas data is presented. The l implies lite as in diluted beer, not illumination, 85 comes from the version of feff 8. Using either feff8l or feff85exafs or some combination of these is fine with us. You can edit the titles on the data page to put your own information in the header written to the data chix files. Exafs analysis was performed using feff6 and the artemis program. Four exafs scans were obtained in transmission mode and averaged for analysis. Its primary function is to generate input files for the popular xafs theory code, feff, from crystallographic data. Pdf data analysis for xray absorption spectroscopy using. Xanes and exafs investigation of uranium incorporation on.
Bruce ravels notes on using feffit for data analysis daresbury laboratory lectures on data analysis excurv98 grant bunkers xafs tutorials frenkel et al on comparing pca with other methods chantler uni. We will provide you with other material closer to the summer school. For your references, we will be using the software athena artemis for data analysis. I am seeing significant differences between the exafs spectra data from larch and athena as well as differences in the fitting results. A fine powder was mixed with polyethylene glycol and pressed into a thin rigid pellet. Athenaartemis revised 2nd edition in 2006, isbn 9529205600. Theory, experiment, and advanced applications 4 what this talk is not an exhaustive documentation of every feature in artemis and athena a. In this video, i demonstrate how to import chik data and crystal structure data. Exafs 2018 ssrl summer school on synchrotron xray absorption. Simplified analysis of exafs data and determination of bond lengths. Surprisingly they only appear together in one myth the story of persephone. Atoms atoms is a program providing crystallographic functionality for the xray absorption spectroscopist.
Please make sure that you view in 720p resolution for better visualization. It contains several packages such as athena, artemis and hephaestus, which are widely used in the xafs community. A sustainable software innovation institute for xray and neutron scattering sixns is proposed to bring modeling and analysis of xray, electron, and neutron scattering experiments in alignment with the needs of the scattering science community by transforming existing codes into useful and user. Athena no analogous exafs signal extraction artemis fitheo signal.
For a complete description and program manuals refer to the project home page 7 on the web. Simplified analysis of exafs data and determination of. Ifeffit combines stateoftheart analysis algorithms with graphical display of xafs data, and general data manipulation. Gnxas is an advanced software based on multiplescattering ms calculations and a rigorous fitting procedure of the raw experimental data. Theory, experiment, and advanced applications 4 what this talk is not an exhaustive documentation of every feature in artemis and athena a detailed tutorial a discussion of exafs theory. One of the primary motivations for larch was processing xafs data. Artemis users guide this is the users guide for the current version of artemis. Athena is the goddess of wisdom and craft, a fine patron for the xas. This package is based on the ifeffit library of numerical and xas algorithms and is written in the perl programming language using the perltk graphics toolkit.
This replacement is essentially complete insofar as all the main functionality of ifeffit. The exafs data were pretreated using athena mode of iffefit 7. R versus r spectra, the fitting of exafs spectra were carried out by artemis interfaces of iffefit 7. Frequently asked questions about demeter, athena, artemis, and hephaestus. Ifeffit is a library and set of interactive programs for the analysis of xray absorption finestructure xafs data. Aug 01, 2017 this video contains material for data processing prior to exafs fitting.
In november 2011 bruce ravel gave a course on the demeter commonly known as athena package at diamond. This is the users guide for the current version of athena. Case management software penelope by athena software. Bruce, thanks for the comprehensive response to my questions. The audience for this talk is interested in advanced techniques which will improve their use of their exafs data. Artemis s sister program athena is the data processing program. Xas data processing just as phaeacian men excel the world at sailing, driving their swift ships on the open seas, so the women excel at all the arts of weaving. The tholos sanctuary of athena pronoia, athena of forethought. Third sixns planning workshop announced at u of washington jan 1718, 2014. Athena and artemis were the two virgin daughters of zeus in the greek pantheon.
Melbourne on the absolute determination of xray absorption programs esrf software catalog xfit exafspak athena and artemis feffit and. Artemis ran on a variety of windows and web based platforms using oracle and microsoft sql server databases. Pdf data analysis for xray absorption spectroscopy. I am using artemis to analysis exafs data, and the figure produced by the software is not very suitable for publishing.
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